HL_8A57_045

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_045 not in the Motif Atlas

Geometric match to HL_7RQB_046

Geometric discrepancy: 0.0934

The information below is about HL_7RQB_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8A57|1|A|C|1839
8A57|1|A|G|1840
8A57|1|A|U|1841
8A57|1|A|A|1842
8A57|1|A|A|1843
8A57|1|A|G|1844

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain G

50S ribosomal protein L2