HL_8A57_047

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_047 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2445

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8A57|1|A|G|1943
8A57|1|A|U|1944
8A57|1|A|A|1945
8A57|1|A|A|1946
8A57|1|A|C|1947
8A57|1|A|U|1948
8A57|1|A|A|1949
8A57|1|A|U|1950
8A57|1|A|A|1951
8A57|1|A|A|1952
8A57|1|A|C|1953

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

GTPase HflX