HL_8A57_057

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_057 not in the Motif Atlas

Geometric match to HL_5DDP_001

Geometric discrepancy: 0.0792

The information below is about HL_5DDP_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8A57|1|A|C|2407
8A57|1|A|G|2408
8A57|1|A|A|2409
8A57|1|A|A|2410
8A57|1|A|A|2411
8A57|1|A|G|2412

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L18