HL_8A57_063

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_063 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.0735

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8A57|1|A|C|2691
8A57|1|A|G|2692
8A57|1|A|A|2693
8A57|1|A|G|2694
8A57|1|A|A|2695
8A57|1|A|G|2696

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

GTPase HflX

Chain K

50S ribosomal protein L6