HL_8A57_077
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUCCCAUACCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 8A57|1|B|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A57_077 not in the Motif Atlas
- Homologous match to HL_4V9F_074
- Geometric discrepancy: 0.1316
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8A57|1|B|U|32
8A57|1|B|U|33
8A57|1|B|C|34
8A57|1|B|C|35
8A57|1|B|C|36
8A57|1|B|A|37
8A57|1|B|U|38
8A57|1|B|A|39
8A57|1|B|C|40
8A57|1|B|C|41
8A57|1|B|G|42
8A57|1|B|A|43
8A57|1|B|A|44
8A57|1|B|C|45
8A57|1|B|A|46
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L31 type B
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 50S ribosomal protein L5
- Chain R
- 50S ribosomal protein L18
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