HL_8AGT_079

3D structure

PDB id

8AGT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUAGCAUG

Length

9 nucleotides

Bulged bases

8AGT|1|x|C|36

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGT_079 not in the Motif Atlas

Homologous match to HL_2BTE_002

Geometric discrepancy: 0.5495

The information below is about HL_2BTE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AGT|1|x|C|31
8AGT|1|x|U|32
8AGT|1|x|U|33
8AGT|1|x|A|34
8AGT|1|x|G|35
8AGT|1|x|C|36
8AGT|1|x|A|37
8AGT|1|x|U|38
8AGT|1|x|G|39

Current chains

Chain x

A-site Ala aminoacyl-tRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2