HL_8AGT_081

3D structure

PDB id

8AGT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAGUCAG

Length

7 nucleotides

Bulged bases

8AGT|1|y|U|16, 8AGT|1|y|C|17

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGT_081 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.1745

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AGT|1|y|U|13
8AGT|1|y|A|14
8AGT|1|y|G|15
8AGT|1|y|U|16
8AGT|1|y|C|17
8AGT|1|y|A|21
8AGT|1|y|G|22

Current chains

Chain y

P-site petidyl-tRNA

Nearby chains

Chain a

Ribosome quality control complex subunit 2

Chain f

Large subunit ribosomal RNA; LSU rRNA

Chain s

60S ribosomal protein L11-A