HL_8AGV_023

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8AGV|1|f|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_023 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.2586

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8AGV|1|f|C|1023
8AGV|1|f|G|1024
8AGV|1|f|A|1025
8AGV|1|f|A|1026
8AGV|1|f|A|1027
8AGV|1|f|U|1028
8AGV|1|f|G|1029

Current chains

Chain f

25S rRNA

Nearby chains

Chain a

RQC2 isoform 1

Chain s

60S ribosomal protein L11-A