HL_8AGV_037

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8AGV|1|f|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.0971

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8AGV|1|f|G|1680
8AGV|1|f|U|1681
8AGV|1|f|U|1682
8AGV|1|f|A|1683
8AGV|1|f|U|1684
8AGV|1|f|C|1685
8AGV|1|f|U|1686
8AGV|1|f|U|1687
8AGV|1|f|U|1688

Current chains

Chain f

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L19-A

Chain H

60S ribosomal protein L22-A

Chain e

E3 ubiquitin-protein ligase listerin