HL_8AGV_064

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_064 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.1343

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8AGV|1|f|U|2920
8AGV|1|f|U|2921
8AGV|1|f|G|2922
8AGV|1|f|U|2923
8AGV|1|f|U|2924
8AGV|1|f|C|2925
8AGV|1|f|A|2926

Current chains

Chain f

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain x

Transfer RNA; tRNA