HL_8AGV_068

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8AGV|1|f|G|3116, 8AGV|1|f|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0503

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8AGV|1|f|C|3110
8AGV|1|f|U|3111
8AGV|1|f|G|3112
8AGV|1|f|A|3113
8AGV|1|f|A|3114
8AGV|1|f|C|3115
8AGV|1|f|G|3116
8AGV|1|f|C|3117
8AGV|1|f|C|3118
8AGV|1|f|U|3119
8AGV|1|f|C|3120
8AGV|1|f|U|3121
8AGV|1|f|A|3122
8AGV|1|f|A|3123
8AGV|1|f|G|3124

Current chains

Chain f

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L16-A

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A