HL_8AGV_069

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8AGV|1|f|U|3195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_069 not in the Motif Atlas

Geometric match to HL_5TBW_068

Geometric discrepancy: 0.1949

The information below is about HL_5TBW_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8AGV|1|f|C|3194
8AGV|1|f|U|3195
8AGV|1|f|U|3196
8AGV|1|f|G|3197

Current chains

Chain f

25S rRNA

Nearby chains

Chain q

60S ribosomal protein L9-A

Chain u

60S ribosomal protein L14-A