HL_8AGV_078

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAGUCGAG

Length

8 nucleotides

Bulged bases

8AGV|1|x|U|16, 8AGV|1|x|C|17, 8AGV|1|x|G|18

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGV_078 not in the Motif Atlas

Homologous match to HL_3AMU_001

Geometric discrepancy: 0.2172

The information below is about HL_3AMU_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_09260.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8AGV|1|x|U|13
8AGV|1|x|A|14
8AGV|1|x|G|15
8AGV|1|x|U|16
8AGV|1|x|C|17
8AGV|1|x|G|18
8AGV|1|x|A|21
8AGV|1|x|G|22

Current chains

Chain x

Ala tRNA

Nearby chains

Chain a

RQC2 isoform 1