HL_8AGW_051

3D structure

PDB id

8AGW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8AGW|1|f|A|2372, 8AGW|1|f|A|2373, 8AGW|1|f|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGW_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0513

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8AGW|1|f|G|2369
8AGW|1|f|G|2370
8AGW|1|f|G|2371
8AGW|1|f|A|2372
8AGW|1|f|A|2373
8AGW|1|f|C|2374
8AGW|1|f|G|2375
8AGW|1|f|G|2376
8AGW|1|f|G|2377
8AGW|1|f|C|2378

Current chains

Chain f

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L32

Chain k

60S ribosomal protein L3