HL_8AGX_005

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8AGX|1|f|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGX_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0733

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8AGX|1|f|U|194
8AGX|1|f|U|195
8AGX|1|f|G|196
8AGX|1|f|G|197
8AGX|1|f|A|198
8AGX|1|f|A|199
8AGX|1|f|C|200
8AGX|1|f|A|201

Current chains

Chain f

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L26-A

Chain R

60S ribosomal protein L32

Chain l

60S ribosomal protein L4-A