HL_8AGX_009
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 8AGX|1|f|G|304, 8AGX|1|f|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_009 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.0671
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8AGX|1|f|G|303
8AGX|1|f|G|304
8AGX|1|f|U|305
8AGX|1|f|A|306
8AGX|1|f|A|307
8AGX|1|f|A|308
8AGX|1|f|U|309
8AGX|1|f|U|310
8AGX|1|f|C|311
8AGX|1|f|C|312
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain N
- 60S ribosomal protein L28
- Chain V
- 60S ribosomal protein L36-A
- Chain b
- 60S ribosomal protein L42-A
- Chain t
- 60S ribosomal protein L13-A
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