HL_8AGX_065

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGX_065 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.0531

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8AGX|1|f|C|2963
8AGX|1|f|G|2964
8AGX|1|f|U|2965
8AGX|1|f|G|2966
8AGX|1|f|A|2967
8AGX|1|f|G|2968

Current chains

Chain f

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L2-A

Chain v

Eukaryotic translation initiation factor 5A-1

Chain y

Transfer RNA; tRNA