HL_8AGX_068

3D structure

PDB id

8AGX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8AGX|1|f|G|3116, 8AGX|1|f|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGX_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0503

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8AGX|1|f|C|3110
8AGX|1|f|U|3111
8AGX|1|f|G|3112
8AGX|1|f|A|3113
8AGX|1|f|A|3114
8AGX|1|f|C|3115
8AGX|1|f|G|3116
8AGX|1|f|C|3117
8AGX|1|f|C|3118
8AGX|1|f|U|3119
8AGX|1|f|C|3120
8AGX|1|f|U|3121
8AGX|1|f|A|3122
8AGX|1|f|A|3123
8AGX|1|f|G|3124

Current chains

Chain f

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L16-A

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A