HL_8AGX_081
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAGUCAG
- Length
- 7 nucleotides
- Bulged bases
- 8AGX|1|y|U|16, 8AGX|1|y|C|17
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_081 not in the Motif Atlas
- Homologous match to HL_4YYE_001
- Geometric discrepancy: 0.2498
- The information below is about HL_4YYE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AGX|1|y|U|13
8AGX|1|y|A|14
8AGX|1|y|G|15
8AGX|1|y|U|16
8AGX|1|y|C|17
8AGX|1|y|A|21
8AGX|1|y|G|22
Current chains
- Chain y
- Ala tRNA
Nearby chains
- Chain a
- Ribosome quality control complex subunit 2
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- 60S ribosomal protein L11-A
- Chain v
- Eukaryotic translation initiation factor 5A-1
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