HL_8AGZ_034

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAUUUUAUGCAG

Length

14 nucleotides

Bulged bases

8AGZ|1|f|U|1569

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AGZ|1|f|C|1563
8AGZ|1|f|U|1564
8AGZ|1|f|G|1565
8AGZ|1|f|A|1566
8AGZ|1|f|U|1567
8AGZ|1|f|U|1568
8AGZ|1|f|U|1569
8AGZ|1|f|U|1570
8AGZ|1|f|A|1571
8AGZ|1|f|U|1572
8AGZ|1|f|G|1573
8AGZ|1|f|C|1574
8AGZ|1|f|A|1575
8AGZ|1|f|G|1576

Current chains

Chain f

25S rRNA

Nearby chains

Chain K

60S ribosomal protein L25

Chain d

60S ribosomal protein L41-A

Chain i

5.8S ribosomal RNA; 5.8S rRNA