HL_8AGZ_052

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8AGZ|1|f|U|2472

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGZ_052 not in the Motif Atlas

Geometric match to HL_8C3A_013

Geometric discrepancy: 0.394

The information below is about HL_8C3A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23696.1

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8AGZ|1|f|C|2470
8AGZ|1|f|U|2471
8AGZ|1|f|U|2472
8AGZ|1|f|C|2473
8AGZ|1|f|G|2474
8AGZ|1|f|G|2475

Current chains

Chain f

25S rRNA

Nearby chains

Chain w

60S ribosomal protein L1-A