HL_8AGZ_064

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGZ_064 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1552

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8AGZ|1|f|U|2920
8AGZ|1|f|U|2921
8AGZ|1|f|G|2922
8AGZ|1|f|U|2923
8AGZ|1|f|U|2924
8AGZ|1|f|C|2925
8AGZ|1|f|A|2926

Current chains

Chain f

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain x

Transfer RNA; tRNA