HL_8AGZ_066
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGZ_066 not in the Motif Atlas
- Geometric match to HL_6UFH_002
- Geometric discrepancy: 0.0999
- The information below is about HL_6UFH_002
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
8AGZ|1|f|C|3025
8AGZ|1|f|G|3026
8AGZ|1|f|A|3027
8AGZ|1|f|G|3028
8AGZ|1|f|A|3029
8AGZ|1|f|G|3030
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain Z
- Ubiquitin-60S ribosomal protein L40
- Chain a
- RQC2 isoform 1
- Chain e
- E3 ubiquitin-protein ligase listerin
- Chain q
- 60S ribosomal protein L9-A
Coloring options: