HL_8AGZ_068

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8AGZ|1|f|G|3116, 8AGZ|1|f|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGZ_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0502

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8AGZ|1|f|C|3110
8AGZ|1|f|U|3111
8AGZ|1|f|G|3112
8AGZ|1|f|A|3113
8AGZ|1|f|A|3114
8AGZ|1|f|C|3115
8AGZ|1|f|G|3116
8AGZ|1|f|C|3117
8AGZ|1|f|C|3118
8AGZ|1|f|U|3119
8AGZ|1|f|C|3120
8AGZ|1|f|U|3121
8AGZ|1|f|A|3122
8AGZ|1|f|A|3123
8AGZ|1|f|G|3124

Current chains

Chain f

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L16-A

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A