HL_8AGZ_079

3D structure

PDB id

8AGZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUIGCAUG

Length

9 nucleotides

Bulged bases

8AGZ|1|x|G|35, 8AGZ|1|x|C|36

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGZ_079 not in the Motif Atlas

Homologous match to HL_2BTE_002

Geometric discrepancy: 0.5948

The information below is about HL_2BTE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AGZ|1|x|C|31
8AGZ|1|x|U|32
8AGZ|1|x|U|33
8AGZ|1|x|I|34
8AGZ|1|x|G|35
8AGZ|1|x|C|36
8AGZ|1|x|A|37
8AGZ|1|x|U|38
8AGZ|1|x|G|39

Current chains

Chain x

Ala tRNA

Nearby chains

Chain a

RQC2 isoform 1