HL_8AKN_009

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8AKN|1|B|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.0879

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8AKN|1|B|C|342
8AKN|1|B|U|343
8AKN|1|B|A|344
8AKN|1|B|C|345
8AKN|1|B|G|346
8AKN|1|B|G|347

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19