HL_8AKN_025

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8AKN|1|B|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_025 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2752

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8AKN|1|B|G|1134
8AKN|1|B|U|1135
8AKN|1|B|C|1136
8AKN|1|B|C|1137
8AKN|1|B|G|1138
8AKN|1|B|G|1139
8AKN|1|B|C|1140

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S9