HL_8AKN_026
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGAUAAA
- Length
- 7 nucleotides
- Bulged bases
- 8AKN|1|B|U|1168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AKN_026 not in the Motif Atlas
- Homologous match to HL_4LFB_027
- Geometric discrepancy: 0.253
- The information below is about HL_4LFB_027
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
8AKN|1|B|U|1165
8AKN|1|B|G|1166
8AKN|1|B|A|1167
8AKN|1|B|U|1168
8AKN|1|B|A|1169
8AKN|1|B|A|1170
8AKN|1|B|A|1171
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S2
- Chain V
- 30S ribosomal protein S21
Coloring options: