HL_8AKN_037

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUUCAAGUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_037 not in the Motif Atlas

Homologous match to HL_6GSK_204

Geometric discrepancy: 0.5246

The information below is about HL_6GSK_204

Detailed Annotation

T-loop

Broad Annotation

T-loop

Motif group

HL_20535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8AKN|1|Z|G|52
8AKN|1|Z|G|53
8AKN|1|Z|U|54
8AKN|1|Z|U|55
8AKN|1|Z|C|56
8AKN|1|Z|A|57
8AKN|1|Z|A|58
8AKN|1|Z|G|59
8AKN|1|Z|U|60
8AKN|1|Z|C|61
8AKN|1|Z|C|62

Current chains

Chain Z

Isoleucine-tRNA

Nearby chains