HL_8AKN_048

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8AKN|1|a|G|329, 8AKN|1|a|A|330, 8AKN|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_048 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0749

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8AKN|1|a|G|327
8AKN|1|a|U|328
8AKN|1|a|G|329
8AKN|1|a|A|330
8AKN|1|a|C|331
8AKN|1|a|A|332
8AKN|1|a|G|333
8AKN|1|a|C|334
8AKN|1|a|C|335

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24