HL_8AKN_050

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8AKN|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_050 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0657

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8AKN|1|a|G|410
8AKN|1|a|G|411
8AKN|1|a|A|412
8AKN|1|a|C|413
8AKN|1|a|C|414
8AKN|1|a|A|415
8AKN|1|a|U|416
8AKN|1|a|C|417

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15