HL_8AKN_053

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8AKN|1|a|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_053 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3703

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8AKN|1|a|C|544
8AKN|1|a|U|545
8AKN|1|a|U|546
8AKN|1|a|A|547
8AKN|1|a|G|548
8AKN|1|a|G|549

Current chains

Chain a

23S ribosomal RNA

Nearby chains