3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
UGAAAGG
Length
7 nucleotides
Bulged bases
8AKN|1|a|A|781, 8AKN|1|a|G|784
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8AKN_060 not in the Motif Atlas
Homologous match to HL_7RQB_024
Geometric discrepancy: 0.0409
The information below is about HL_7RQB_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74322.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
4

Unit IDs

8AKN|1|a|U|779
8AKN|1|a|G|780
8AKN|1|a|A|781
8AKN|1|a|A|782
8AKN|1|a|A|783
8AKN|1|a|G|784
8AKN|1|a|G|785

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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