HL_8AKN_072

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8AKN|1|a|C|1493, 8AKN|1|a|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_072 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1031

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8AKN|1|a|G|1492
8AKN|1|a|C|1493
8AKN|1|a|A|1494
8AKN|1|a|A|1495
8AKN|1|a|A|1496
8AKN|1|a|U|1497
8AKN|1|a|C|1498

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2