HL_8AKN_082

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

8AKN|1|a|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_082 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2783

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8AKN|1|a|C|1868
8AKN|1|a|G|1869
8AKN|1|a|C|1870
8AKN|1|a|A|1871
8AKN|1|a|A|1872
8AKN|1|a|G|1873

Current chains

Chain a

23S ribosomal RNA

Nearby chains