HL_8AKN_085

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8AKN|1|a|A|2030, 8AKN|1|a|A|2031, 8AKN|1|a|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AKN_085 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1111

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8AKN|1|a|G|2027
8AKN|1|a|U|2028
8AKN|1|a|G|2029
8AKN|1|a|A|2030
8AKN|1|a|A|2031
8AKN|1|a|G|2032
8AKN|1|a|A|2033
8AKN|1|a|U|2034
8AKN|1|a|G|2035
8AKN|1|a|C|2036

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain q

50S ribosomal protein L21

Chain z

50S ribosomal protein L32