HL_8AKN_108

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUCAUCCCGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AKN|1|a|G|883
8AKN|1|a|U|884
8AKN|1|a|C|885
8AKN|1|a|A|886
8AKN|1|a|U|887
8AKN|1|a|C|888
8AKN|1|a|C|889
8AKN|1|a|C|890
8AKN|1|a|G|891
8AKN|1|a|A|892
8AKN|1|a|C|893

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13