HL_8AM9_002
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUUCAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AM9_002 not in the Motif Atlas
- Homologous match to HL_4YCO_002
- Geometric discrepancy: 0.1249
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
8AM9|1|8|A|32
8AM9|1|8|U|33
8AM9|1|8|U|34
8AM9|1|8|C|35
8AM9|1|8|A|36
8AM9|1|8|A|37
8AM9|1|8|A|38
8AM9|1|8|A|39
8AM9|1|8|U|40
Current chains
- Chain 8
- Leucine tRNA
Nearby chains
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S12
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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