HL_8AM9_014

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8AM9|1|B|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_014 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1449

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8AM9|1|B|C|419
8AM9|1|B|U|420
8AM9|1|B|U|421
8AM9|1|B|C|422
8AM9|1|B|G|423
8AM9|1|B|G|424

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S3

Chain E

30S ribosomal protein S4