HL_8AM9_015

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8AM9|1|B|A|465, 8AM9|1|B|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_015 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3101

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8AM9|1|B|G|462
8AM9|1|B|U|463
8AM9|1|B|U|464
8AM9|1|B|A|465
8AM9|1|B|A|466
8AM9|1|B|U|467
8AM9|1|B|A|468
8AM9|1|B|C|469
8AM9|1|B|C|470

Current chains

Chain B

16S ribosomal RNA

Nearby chains