HL_8AM9_028

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8AM9|1|B|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_028 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2452

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AM9|1|B|G|1134
8AM9|1|B|U|1135
8AM9|1|B|C|1136
8AM9|1|B|C|1137
8AM9|1|B|G|1138
8AM9|1|B|G|1139
8AM9|1|B|C|1140

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S9