HL_8AM9_048
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8AM9|1|a|G|329, 8AM9|1|a|A|330, 8AM9|1|a|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AM9_048 not in the Motif Atlas
- Homologous match to HL_7RQB_012
- Geometric discrepancy: 0.096
- The information below is about HL_7RQB_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.9
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 19
Unit IDs
8AM9|1|a|G|327
8AM9|1|a|U|328
8AM9|1|a|G|329
8AM9|1|a|A|330
8AM9|1|a|C|331
8AM9|1|a|A|332
8AM9|1|a|G|333
8AM9|1|a|C|334
8AM9|1|a|C|335
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain t
- 50S ribosomal protein L24
Coloring options: