HL_8AM9_055

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8AM9|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_055 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.2496

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8AM9|1|a|C|611
8AM9|1|a|G|612
8AM9|1|a|A|613
8AM9|1|a|A|614
8AM9|1|a|U|615
8AM9|1|a|A|616
8AM9|1|a|G|617

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4