HL_8AM9_062

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_062 not in the Motif Atlas

Geometric match to HL_5J7L_011

Geometric discrepancy: 0.3752

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8AM9|1|a|C|885
8AM9|1|a|A|886
8AM9|1|a|U|887
8AM9|1|a|C|888
8AM9|1|a|C|889
8AM9|1|a|C|890
8AM9|1|a|G|891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S13