HL_8AM9_065

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCAGACAGCGUCGAG

Length

16 nucleotides

Bulged bases

8AM9|1|a|A|1046, 8AM9|1|a|G|1107

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AM9|1|a|C|1043
8AM9|1|a|C|1044
8AM9|1|a|C|1045
8AM9|1|a|A|1046
8AM9|1|a|G|1047
8AM9|1|a|A|1048
8AM9|1|a|C|1049
8AM9|1|a|A|1050
8AM9|1|a|G|1051
8AM9|1|a|C|1052
8AM9|1|a|G|1107
8AM9|1|a|U|1108
8AM9|1|a|C|1109
8AM9|1|a|G|1110
8AM9|1|a|A|1111
8AM9|1|a|G|1112

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L6