HL_8AM9_069

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

8AM9|1|a|U|1325, 8AM9|1|a|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_069 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.128

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8AM9|1|a|G|1324
8AM9|1|a|U|1325
8AM9|1|a|U|1326
8AM9|1|a|A|1327
8AM9|1|a|A|1328
8AM9|1|a|U|1329
8AM9|1|a|C|1330

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22