HL_8AM9_107
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAAUCGGUAGAC
- Length
- 13 nucleotides
- Bulged bases
- 8AM9|1|8|U|16, 8AM9|1|8|C|17, 8AM9|1|8|G|18, 8AM9|1|8|G|19, 8AM9|1|8|U|20, 8AM9|1|8|G|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AM9_107 not in the Motif Atlas
- Homologous match to HL_4JYZ_001
- Geometric discrepancy: 0.4878
- The information below is about HL_4JYZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.4
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
8AM9|1|8|G|12
8AM9|1|8|A|13
8AM9|1|8|A|14
8AM9|1|8|A|15
8AM9|1|8|U|16
8AM9|1|8|C|17
8AM9|1|8|G|18
8AM9|1|8|G|19
8AM9|1|8|U|20
8AM9|1|8|A|21
8AM9|1|8|G|22
8AM9|1|8|A|23
8AM9|1|8|C|24
Current chains
- Chain 8
- Leucine tRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: