3D structure

PDB id
8ANA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
8ANA|1|a|G|329, 8ANA|1|a|A|330, 8ANA|1|a|C|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ANA_011 not in the Motif Atlas
Homologous match to HL_7RQB_012
Geometric discrepancy: 0.073
The information below is about HL_7RQB_012
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.9
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
19

Unit IDs

8ANA|1|a|G|327
8ANA|1|a|U|328
8ANA|1|a|G|329
8ANA|1|a|A|330
8ANA|1|a|C|331
8ANA|1|a|A|332
8ANA|1|a|G|333
8ANA|1|a|C|334
8ANA|1|a|C|335

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain t
50S ribosomal protein L24

Coloring options:


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