HL_8ANY_042

3D structure

PDB id

8ANY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CACCACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ANY_042 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3036

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8ANY|1|AA|C|734
8ANY|1|AA|A|735
8ANY|1|AA|C|736
8ANY|1|AA|C|737
8ANY|1|AA|A|738
8ANY|1|AA|C|739
8ANY|1|AA|G|740

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial