HL_8ANY_043

3D structure

PDB id

8ANY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ANY_043 not in the Motif Atlas

Geometric match to HL_5FJC_002

Geometric discrepancy: 0.0786

The information below is about HL_5FJC_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8ANY|1|AA|A|768
8ANY|1|AA|G|769
8ANY|1|AA|C|770
8ANY|1|AA|A|771
8ANY|1|AA|A|772
8ANY|1|AA|U|773

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AL

28S ribosomal protein S15, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial